Includes bibliographical references and index.

Methods for Discovery and Characterization of DNA Sequence Motifs / Philipp Bucher -- Comparative Genome Analysis / Robert M. Waterhouse ... [et al.] -- From Modules to Models: Advanced Analysis Methods for Large-Scale Data / Sven Bergmann -- Integrated Analysis of Gene Expression Profiling Studies: Examples in Breast Cancer / Pratyaksha Wirapati ... [et al.] -- Computational Biology of Small Regulatory RNAs / Mihaela Zavolan and Lukasz Jaskiewicz -- UniProtKB/Swiss-Prot Manual and Automated Annotation of Complete Proteomes: The Dictyostelium discoideum Case Study / Amos Bairoch and Lydie Lane -- Analytical Bioinformatics for Proteomics / Patricia M. Palagi, Fr�ed�erique Lisacek -- Protein-Protein Interaction Networks: Assembly and Analysis / Christian von Mering -- Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics / Torsten Schwede and Manuel C. Peitsch -- Molecular Modeling of Proteins: From Simulations to Drug Design Applications / Vincente Zoete ... [et al.] -- An Introduction to Phylogenetics and Its Molecular Aspects / Gabriel J. Bittar and Bernhard Pascal Sonderegger -- Phylogenetic Tree Building Methods / Manuel Gil and Gaston H. Gonnet -- Bioinformatics for Evolutionary Developmental Biology / Marc Robinson-Rechavi -- Spatiotemporal Modeling and Simulation in Biology / Ivo F. Sbalzarini.